Guidance on the Inventory of Select Agents and Toxins

Changes and Highlights


This is a living document subject to ongoing improvement. Feedback or suggestions for improvement from registered Select Agent entities or the public are welcomed. Submit comments directly to the Federal Select Agent Program at:

Revision History:
  • October 2012: Initial posting
  • March 2013 (Revision 1): The revisions are primarily changes to correct editorial errors from previous version and to clarify for toxin material that there is no differentiation between working stock and long-term storage.
  • June 2014 (Revision 2): The document was revised to update toxin language to reflect the technical amendment to the select agent regulations. Specifically, the following language on page 5 was revised: “An entity does not need to apply for an exclusion if the agent is non-viable or the toxin is nonfunctional as these are not regulated. However, it is recommended that an entity maintain information on file in support of the method used for rendering a select agent non-viable or a select toxin nonfunctional so that the entity is able to demonstrate that the agent or toxin is no longer subject to the select agent and toxin regulations.”
  • April 2015: The document was revised to update 1) recombinant and synthetic nucleic acid definitions, 2) language quoted from select agent regulation Section17(a)(1), (3) include nucleic acids that can produce infectious forms of select agent viruses as regulated material, and 4) Tier 1 Personnel Suitability requirements. The revisions also included external hyperlinks to Security, Personnel Suitability, and Toxin Due Diligence guidance documents and internal hyperlinks to Appendices I and II.
  • January 2017: The document was revised to update 1) record maintenance and 2) Material Containing Select Agents or Regulated Nucleic Acids.
  • March 2017: The document was revised based on changes to the regulations.
  • December 2020: Minor updates. Fixed broken hyperlinks.
  • June 2022: Added new appendix section about labeling guidance. Additional minor updates.
  • September 2022: Added a labeling guidance appendix and other edits to enhance material accountability after soliciting comments from entities.

Download full Guidance on the Inventory of Select Agents and Toxins [PDF – 889 KB]


The select agent regulations require an accurate and current inventory for: (1) each select agent (including viral genetic elements, recombinant and/or synthetic nucleic acids, and recombinant and/or synthetic organisms) held in long-term storage; (2) any animals or plants intentionally or accidentally exposed to or infected with a select agent and (3) for each toxin held. See 42 CFR § 73.17, 7 CFR § 331.17, and 9 CFR § 121.17.